species:   Rhsol
pid:       PID0581
parent:    Rhi-milR-21
paralog:   
locus:     KB317742.1:112670-112782
matures:   ['AGCGAGGUAGAACAAGUAAGUCC', 'UCUUGCAUUUGCCUUGGAAA']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317742.1:112670-112782

0 out of bounds
70 alignments
61 proper strand
34 stranded perfect matches

          ************************                                 ***************************                   
UAAAAAGAAUUUCUCUUGCAUUUGCCUUGGAAAAGAGGUCUUUUGUAUUUAAUGGACUUCAUAACCCGAUAGCGAGGUAGAACAAGUAAGUCCAUAGUUUUUUUUAACACCUG
(((((((((((...(((((.(((((((((.....(((((((.(((....))).)))))))............)))))))))....))))).....))))))))))).......
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCC-------------------- l=23 a=0 c
-------------UCUUGCAUUUGCCUUGGAAA-------------------------------------------------------------------------------- l=20 a=0 c*
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCCA------------------- l=25 a=9 ma
------------CUCUUGCAUUUGCCUUGGAAAA------------------------------------------------------------------------------- l=22 a=0 ma*

-------------------------------------------------------------------------GAGGUAGAACAAGUAAGUC--------------------- l=19 a=1 
------------------------------------------------------------------------CGAGGUAGAACAAGUAAGUCC-------------------- l=21 a=1 
------------------------------------------------------------------------CGAGGUAGAACAAGUAAGUCCA------------------- l=22 a=1 
-----------------------------------------------------------------------GCGAGGUAGAACAAGUAAGUCC-------------------- l=22 a=1 
-----------------------------------------------------------------------GCGAGGUAGAACAAGUAAGUCCc------------------- l=23 a=1 
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCg-------------------- l=23 a=1 
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCCA------------------- l=24 a=1 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAG----------------------- l=21 a=1 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGU---------------------- l=22 a=7 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUC--------------------- l=23 a=2 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCa-------------------- l=24 a=19 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCC-------------------- l=24 a=8 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCg-------------------- l=24 a=3 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCCA------------------- l=25 a=9 (ma)
---------------------------------------------------------------------UAuCGAGGUAGAACAAGUAAGUCCA------------------- l=25 a=1 
--------------------------------------------------------------------AUAGCGAGGUAGAACAAGUAAG----------------------- l=22 a=1 
--------------------------------------------------------------------AUAGCGAGGUAGAACAAGUAAGUC--------------------- l=24 a=1 
------------------------------------------------------------------CGAUAGCGAGGUAGAACAAu--------------------------- l=20 a=1 
------------------------------------------------------------AUAACCCGAUAGCGAaGUAGAACA----------------------------- l=24 a=1 

mb-01010
ax-1001001
ku-01
ss-101011101000
fn-111
